wBuild
  • Readme
  • Dependency
  • MultiOmics
    • HPO_phenotype
      • Compare_HPOmatch_SemSim.R
      • HPO_match.R
      • Organ_involvment.R
      • Semantic_similarity.R
    • Integration
      • RNA_proteome_match.R
      • integrate_omics.R
      • rna_protein_correlation.R
    • Proteomics
      • disease_gene_coverage.R
      • Aberrant_Expression
        • LIMMA
          • LIMMASummary.R
          • batch_normalization.R
        • PROTRIDER
          • PROTRIDERSummary.R
      • Protein_complexes
        • AE_MITO_groups_Protrider.R
        • AE_complexes_Protrider.R
        • AE_complexes_limma.R
    • RNA_seq
      • disease_gene_coverage.R
      • Aberrant_Expression
        • OutriderSummary.R
        • detect_outliers_outrider.R
    • Variant_analysis
      • enrichment_analysis.R
      • enrichment_analysis_variant_type.R
      • outlier_proportions.R
      • outlier_proportions_variant_type.R
  • Paper_figures
    • Figure1_b_rna_proteome_coverage.R
    • Figure1_c_positive_controls.R
    • Figure1_d_VUS_validation.R
    • Figure2_a_integration.R
    • Figure2_b_EPG5_p.R
    • Figure2_c_MORC2_dominant.R
    • Figure2_d_DARS2_rp.R
    • Figure2_e_MRPS25_rp_complex.R
    • Figure3_a_MRPL38.R
    • Figure3_c_mito_ribosome.R
    • Figure3_e_LIG3.R
    • Figure3_h_complexes.R
  • Patient_analysis
    • Patient_analysis.R
    • detected_genes.R
    • diagnosed_cases.R
    • samples_overview.R
  • Supplementary_PROTRIDER
    • S_Fig5.R
    • Summary_fib_all.R
    • limma_vs_protrider.R
    • min_sample_size
  • Supplementary_figures
    • S_Fig1_d_detected_proteins.R
    • S_Fig1_e_gtex_proteomics.R
    • S_Fig1_f_validation.R
    • S_Fig1_g_mito_ribosome.R
    • S_Fig2_a_outliers_per_sample.R
    • S_Fig2_b_enrichment.R
    • S_Fig2_c_proportion_of_RVs.R
    • S_Fig2_d_Hpo_match.R
    • S_Fig2_e_proportion_of_PB.R
    • S_Fig3.R
  • > Todo

Recent Files

Scripts Paper figures Figure1 c positive controls

Scripts MultiOmics Proteomics Protein complexes AE MITO groups Protrider

Scripts MultiOmics Proteomics Protein complexes AE MITO complexes Protrider

readme

dep.svg

Scripts Paper figures Figure3 h complexes

Scripts Patient analysis detected genes

Scripts Supplementary figures S Fig1 e gtex proteomics

Scripts Supplementary figures S Fig3

Scripts Paper figures Figure1 b rna proteome coverage

Created by Dmitrii Smirnov

wBuild by Leonhard Wachutka